Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs12973095 | chr19:15866538 | G/T | 0.000309 | 490 | 16.33 | 14.93 | 19.13 | KM Plot |
| THCA | rs12974929 | chr19:15866532 | C/T | 0.000309 | 490 | 16.33 | 14.93 | 19.13 | KM Plot |
| THCA | rs12976589 | chr19:49353480 | C/T | 8.73E-5 | 480 | 15.93 | 16.63 | 17.77 | KM Plot |
| THCA | rs12977257 | chr19:49353529 | G/A | 8.95E-5 | 479 | 15.9 | 15.83 | 17.77 | KM Plot |
| THCA | rs12984514 | chr19:15860104 | T/A | 0.000315 | 488 | 16.37 | 14.85 | 19.13 | KM Plot |
| THCA | rs12984671 | chr19:15860726 | C/T | 0.000297 | 490 | 16.3 | 14.93 | 19.13 | KM Plot |
| THCA | rs12998251 | chr2:29052256 | T/C | 9.62E-5 | 489 | 14.98 | 17.08 | 15.9 | KM Plot |
| THCA | rs13001838 | chr2:29090582 | C/T | 9.95E-5 | 487 | 14.98 | 16.15 | 15.9 | KM Plot |
| THCA | rs13048106 | chr21:37451922 | T/G | 6.54E-7 | 480 | 16.67 | 14.33 | 9.23 | KM Plot |
| THCA | rs13056307 | chr22:19534079 | G/A | 9.84E-7 | 475 | 15.97 | 16.97 | 14.33 | KM Plot |
| THCA | rs13060931 | chr3:155644616 | G/C | 0.000203 | 488 | 9 | 14.63 | 16.47 | KM Plot |
| THCA | rs13062790 | chr3:183434650 | T/A | 2.53E-5 | 470 | 16.38 | 14.7 | 9 | KM Plot |
| THCA | rs13064589 | chr3:119265356 | A/C | 2.72E-5 | 490 | 15.07 | 19.12 | 28.18 | KM Plot |
| THCA | rs13066416 | chr3:14575479 | C/G | 1.79E-6 | 477 | 16.63 | 14.97 | 14.52 | KM Plot |
| THCA | rs13067479 | chr3:134152197 | A/C | 0.000293 | 490 | 15.13 | 17.27 | 19.23 | KM Plot |